Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC108359.1-201ENST00000616451 1211 ntBASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 REXO1L2P-201ENST00000425429 2069 ntBASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 AC007950.2-201ENST00000615045 2347 ntBASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.58□□□□□ -0.24
RNFT1Q5M7Z0 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 SSR4P1-203ENST00000599569 2260 ntBASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 EIF4HP1-201ENST00000453115 687 ntBASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 RHOQP1-201ENST00000555758 579 ntBASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 NDUFV2P1-201ENST00000596415 907 ntBASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 AC002472.3-201ENST00000640124 621 ntBASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 LILRP1-201ENST00000444199 1370 ntBASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNFT1Q5M7Z0 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 CICP6-201ENST00000457191 2729 ntBASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.56□□□□□ -0.24
RNFT1Q5M7Z0 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms