Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
CLRN1P58418 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
CLRN1P58418 ST20-AS1-201ENST00000560255 4223 ntBASIC13.59□□□□□ -0.23
CLRN1P58418 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CLRN1P58418 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.58□□□□□ -0.23
CLRN1P58418 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.58□□□□□ -0.23
CLRN1P58418 LILRP1-201ENST00000444199 1370 ntBASIC13.58□□□□□ -0.23
CLRN1P58418 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.23
CLRN1P58418 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
CLRN1P58418 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.58□□□□□ -0.23
CLRN1P58418 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CLRN1P58418 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CLRN1P58418 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 AL158070.2-201ENST00000623713 1621 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 AC099063.4-201ENST00000641099 1602 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 C1QBPP1-201ENST00000400117 770 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.58□□□□□ -0.24
CLRN1P58418 AL353779.1-201ENST00000434793 351 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 BCRP1-201ENST00000444246 691 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.58□□□□□ -0.24
CLRN1P58418 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.58□□□□□ -0.24
CLRN1P58418 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.58□□□□□ -0.24
CLRN1P58418 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.58□□□□□ -0.24
CLRN1P58418 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.58□□□□□ -0.24
CLRN1P58418 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.58□□□□□ -0.24
CLRN1P58418 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.58□□□□□ -0.24
CLRN1P58418 LINC02560-201ENST00000596379 459 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 AC007431.3-201ENST00000623221 587 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 BX539320.1-201ENST00000623759 877 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 AL360270.3-201ENST00000609118 1348 ntBASIC13.58□□□□□ -0.24
CLRN1P58418 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.58□□□□□ -0.24
CLRN1P58418 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CLRN1P58418 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CLRN1P58418 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.57□□□□□ -0.24
CLRN1P58418 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.57□□□□□ -0.24
CLRN1P58418 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.57□□□□□ -0.24
CLRN1P58418 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CLRN1P58418 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms