Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FLJ16779-201ENST00000612722 7638 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 MIR1227-201ENST00000408484 88 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 TLE1P1-201ENST00000422965 589 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.88□□□□□ -0.03
CXCL12P48061 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC14.88□□□□□ -0.03
CXCL12P48061 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CXCL12P48061 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.88□□□□□ -0.03
CXCL12P48061 MIR3188-201ENST00000583494 85 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 RPL17P45-201ENST00000586289 509 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.88□□□□□ -0.03
CXCL12P48061 SIGLEC18P-201ENST00000602271 909 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 MIR6858-201ENST00000620733 67 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 AC133540.1-201ENST00000620845 1019 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 AL132780.4-201ENST00000624870 1135 ntBASIC14.88□□□□□ -0.03
CXCL12P48061 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.88□□□□□ -0.03
CXCL12P48061 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CXCL12P48061 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
CXCL12P48061 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CXCL12P48061 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CXCL12P48061 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CXCL12P48061 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.87□□□□□ -0.03
CXCL12P48061 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.87□□□□□ -0.03
CXCL12P48061 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.87□□□□□ -0.03
CXCL12P48061 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.87□□□□□ -0.03
CXCL12P48061 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC14.87□□□□□ -0.03
CXCL12P48061 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.87□□□□□ -0.03
CXCL12P48061 AC005357.2-202ENST00000590507 1060 ntBASIC14.87□□□□□ -0.03
CXCL12P48061 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.87□□□□□ -0.03
CXCL12P48061 BX088702.1-201ENST00000610784 235 ntBASIC14.87□□□□□ -0.03
CXCL12P48061 AL161773.1-201ENST00000624845 863 ntBASIC14.87□□□□□ -0.03
CXCL12P48061 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.87□□□□□ -0.03
CXCL12P48061 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.87□□□□□ -0.03
CXCL12P48061 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CXCL12P48061 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CXCL12P48061 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CXCL12P48061 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.86□□□□□ -0.03
CXCL12P48061 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CXCL12P48061 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.86□□□□□ -0.03
CXCL12P48061 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CXCL12P48061 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CXCL12P48061 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.86□□□□□ -0.03
CXCL12P48061 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.86□□□□□ -0.03
CXCL12P48061 AL603832.2-201ENST00000566195 2125 ntBASIC14.86□□□□□ -0.03
CXCL12P48061 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms