Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
HOXC9P31274 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 LCK-206ENST00000373564 2137 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXC9P31274 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HOXC9P31274 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC9P31274 TMBIM7P-202ENST00000641474 1516 ntBASIC19.76■□□□□ 0.75
HOXC9P31274 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HOXC9P31274 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HOXC9P31274 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HOXC9P31274 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
HOXC9P31274 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXC9P31274 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 RAN-210ENST00000541630 1475 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXC9P31274 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC19.75■□□□□ 0.75
HOXC9P31274 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC19.75■□□□□ 0.75
HOXC9P31274 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
HOXC9P31274 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
HOXC9P31274 STUB1-204ENST00000564370 875 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXC9P31274 AC026803.1-201ENST00000569130 274 ntBASIC19.75■□□□□ 0.75
HOXC9P31274 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
HOXC9P31274 AC133540.1-201ENST00000620845 1019 ntBASIC19.75■□□□□ 0.75
HOXC9P31274 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 AC007718.1-201ENST00000621078 280 ntBASIC19.75■□□□□ 0.75
HOXC9P31274 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXC9P31274 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HOXC9P31274 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HOXC9P31274 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC9P31274 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 CELP-203ENST00000624767 2414 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
HOXC9P31274 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXC9P31274 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
HOXC9P31274 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.74■□□□□ 0.75
HOXC9P31274 AC008267.1-201ENST00000474858 1069 ntBASIC19.74■□□□□ 0.75
HOXC9P31274 IQSEC3P1-201ENST00000538799 536 ntBASIC19.74■□□□□ 0.75
HOXC9P31274 WDR7-208ENST00000589935 544 ntTSL 4 BASIC19.74■□□□□ 0.75
HOXC9P31274 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXC9P31274 AL109837.1-201ENST00000603272 613 ntBASIC19.74■□□□□ 0.75
HOXC9P31274 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXC9P31274 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXC9P31274 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HOXC9P31274 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC9P31274 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms