Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CNOT4O95628 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.54□□□□□ -0.24
CNOT4O95628 TMBIM7P-203ENST00000641617 1718 ntBASIC13.54□□□□□ -0.24
CNOT4O95628 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CNOT4O95628 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
CNOT4O95628 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.54□□□□□ -0.24
CNOT4O95628 CROCCP4-201ENST00000457096 498 ntBASIC13.54□□□□□ -0.24
CNOT4O95628 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.54□□□□□ -0.24
CNOT4O95628 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.54□□□□□ -0.24
CNOT4O95628 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.54□□□□□ -0.24
CNOT4O95628 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.54□□□□□ -0.24
CNOT4O95628 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CNOT4O95628 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 AC087481.3-201ENST00000602886 1894 ntBASIC13.54□□□□□ -0.24
CNOT4O95628 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.54□□□□□ -0.24
CNOT4O95628 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CNOT4O95628 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CNOT4O95628 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.54□□□□□ -0.24
CNOT4O95628 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.54□□□□□ -0.24
CNOT4O95628 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 AC022532.1-201ENST00000624563 1728 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 ST20-AS1-201ENST00000560255 4223 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.53□□□□□ -0.24
CNOT4O95628 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.53□□□□□ -0.24
CNOT4O95628 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 ACTBP8-201ENST00000403258 1108 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
CNOT4O95628 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.53□□□□□ -0.24
CNOT4O95628 BNIP3P42-201ENST00000454982 569 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
CNOT4O95628 AP001889.1-201ENST00000525414 633 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.53□□□□□ -0.24
CNOT4O95628 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.53□□□□□ -0.24
CNOT4O95628 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.53□□□□□ -0.24
CNOT4O95628 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 BNIP3P29-201ENST00000598302 571 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 AC011447.5-201ENST00000616168 564 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.53□□□□□ -0.24
CNOT4O95628 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 AL133338.1-201ENST00000565695 1517 ntBASIC13.53□□□□□ -0.24
CNOT4O95628 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CNOT4O95628 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CNOT4O95628 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms