Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 AC089987.1-201ENST00000551654 2209 ntBASIC12.27□□□□□ -0.44
HMGB3O15347 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.27□□□□□ -0.44
HMGB3O15347 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
HMGB3O15347 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.27□□□□□ -0.44
HMGB3O15347 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.27□□□□□ -0.44
HMGB3O15347 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.27□□□□□ -0.45
HMGB3O15347 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.27□□□□□ -0.45
HMGB3O15347 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
HMGB3O15347 ATP5G2P1-201ENST00000433580 426 ntBASIC12.27□□□□□ -0.45
HMGB3O15347 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.27□□□□□ -0.45
HMGB3O15347 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
HMGB3O15347 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC12.27□□□□□ -0.45
HMGB3O15347 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC12.27□□□□□ -0.45
HMGB3O15347 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
HMGB3O15347 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC12.27□□□□□ -0.45
HMGB3O15347 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 AC135012.1-201ENST00000563931 7430 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.27□□□□□ -0.45
HMGB3O15347 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
HMGB3O15347 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.27□□□□□ -0.45
HMGB3O15347 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.27□□□□□ -0.45
HMGB3O15347 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.27□□□□□ -0.45
HMGB3O15347 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 AC113367.3-201ENST00000508316 1912 ntBASIC12.27□□□□□ -0.45
HMGB3O15347 TACC2-212ENST00000453444 9158 ntTSL 5 BASIC12.27□□□□□ -0.45
HMGB3O15347 CSPG4P12-201ENST00000558282 4853 ntBASIC12.27□□□□□ -0.45
HMGB3O15347 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HMGB3O15347 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HMGB3O15347 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
HMGB3O15347 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.26□□□□□ -0.45
HMGB3O15347 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC12.26□□□□□ -0.45
HMGB3O15347 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
HMGB3O15347 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.26□□□□□ -0.45
HMGB3O15347 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 ZNF286A-203ENST00000421016 5541 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 FIS1-203ENST00000442303 631 ntTSL 3 BASIC12.26□□□□□ -0.45
HMGB3O15347 PRYP6-201ENST00000514804 343 ntBASIC12.26□□□□□ -0.45
HMGB3O15347 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 ETFA-208ENST00000559602 792 ntTSL 3 BASIC12.26□□□□□ -0.45
HMGB3O15347 AL049597.2-201ENST00000565575 961 ntBASIC12.26□□□□□ -0.45
HMGB3O15347 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.26□□□□□ -0.45
HMGB3O15347 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 AL356488.2-201ENST00000602755 427 ntBASIC12.26□□□□□ -0.45
HMGB3O15347 AL009183.1-201ENST00000603760 355 ntBASIC12.26□□□□□ -0.45
HMGB3O15347 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC12.26□□□□□ -0.45
HMGB3O15347 AP000550.4-202ENST00000639755 178 ntBASIC12.26□□□□□ -0.45
HMGB3O15347 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
HMGB3O15347 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 BACH2-210ENST00000537989 9108 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HMGB3O15347 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms