Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 DPM3-202ENST00000368399 517 ntBASIC15.16■□□□□ 0.02
HMGB4Q8WW32 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 AC013355.1-201ENST00000562625 723 ntBASIC15.16■□□□□ 0.02
HMGB4Q8WW32 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 AL645939.5-201ENST00000606834 243 ntBASIC15.16■□□□□ 0.02
HMGB4Q8WW32 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 AC091046.1-201ENST00000331871 207 ntBASIC15.15■□□□□ 0.02
HMGB4Q8WW32 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 PTPA-217ENST00000434095 870 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 AC026740.1-201ENST00000607068 791 ntBASIC15.15■□□□□ 0.02
HMGB4Q8WW32 AC004923.1-202ENST00000642106 209 ntBASIC15.15■□□□□ 0.02
HMGB4Q8WW32 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 AP000593.2-201ENST00000542775 1433 ntBASIC15.15■□□□□ 0.02
HMGB4Q8WW32 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 AL360270.3-201ENST00000609118 1348 ntBASIC15.15■□□□□ 0.02
HMGB4Q8WW32 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB4Q8WW32 AC004899.1-201ENST00000424687 1714 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB4Q8WW32 AC008132.1-202ENST00000342005 1389 ntBASIC15.14■□□□□ 0.01
HMGB4Q8WW32 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms