Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.07■□□□□ 0.16
LIG3P49916 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.07■□□□□ 0.16
LIG3P49916 RN7SL618P-201ENST00000477850 296 ntBASIC16.07■□□□□ 0.16
LIG3P49916 AC009407.1-201ENST00000568958 598 ntBASIC16.07■□□□□ 0.16
LIG3P49916 RN7SL204P-201ENST00000582831 262 ntBASIC16.07■□□□□ 0.16
LIG3P49916 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
LIG3P49916 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.07■□□□□ 0.16
LIG3P49916 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.07■□□□□ 0.16
LIG3P49916 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
LIG3P49916 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
LIG3P49916 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
LIG3P49916 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.07■□□□□ 0.16
LIG3P49916 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
LIG3P49916 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIG3P49916 DKFZP434A062-201ENST00000573103 5021 ntBASIC16.07■□□□□ 0.16
LIG3P49916 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
LIG3P49916 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
LIG3P49916 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 AC092127.1-201ENST00000567093 3455 ntBASIC16.06■□□□□ 0.16
LIG3P49916 AL139385.1-201ENST00000611744 3272 ntBASIC16.06■□□□□ 0.16
LIG3P49916 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 AC105250.1-201ENST00000509378 2057 ntBASIC16.06■□□□□ 0.16
LIG3P49916 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.06■□□□□ 0.16
LIG3P49916 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LIG3P49916 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 AC004987.2-201ENST00000395959 1148 ntBASIC16.06■□□□□ 0.16
LIG3P49916 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.06■□□□□ 0.16
LIG3P49916 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.06■□□□□ 0.16
LIG3P49916 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.06■□□□□ 0.16
LIG3P49916 AC002472.2-201ENST00000442739 958 ntBASIC16.06■□□□□ 0.16
LIG3P49916 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIG3P49916 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.06■□□□□ 0.16
LIG3P49916 AL512361.1-201ENST00000554200 418 ntBASIC16.06■□□□□ 0.16
LIG3P49916 AC243562.2-201ENST00000561247 970 ntBASIC16.06■□□□□ 0.16
LIG3P49916 AC010336.2-201ENST00000564226 506 ntBASIC16.06■□□□□ 0.16
LIG3P49916 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.06■□□□□ 0.16
LIG3P49916 AL033527.5-202ENST00000641632 1098 ntBASIC16.06■□□□□ 0.16
LIG3P49916 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC16.06■□□□□ 0.16
LIG3P49916 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIG3P49916 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC16.06■□□□□ 0.16
LIG3P49916 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIG3P49916 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
LIG3P49916 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LIG3P49916 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LIG3P49916 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
LIG3P49916 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
LIG3P49916 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC16.05■□□□□ 0.16
LIG3P49916 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIG3P49916 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms