Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
HNF4AP41235 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
HNF4AP41235 AC098850.1-201ENST00000419919 790 ntBASIC14.78□□□□□ -0.04
HNF4AP41235 AL353779.1-201ENST00000434793 351 ntBASIC14.78□□□□□ -0.04
HNF4AP41235 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.78□□□□□ -0.04
HNF4AP41235 MYCLP2-201ENST00000449268 967 ntBASIC14.78□□□□□ -0.04
HNF4AP41235 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.78□□□□□ -0.04
HNF4AP41235 API5-211ENST00000534695 560 ntTSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.78□□□□□ -0.04
HNF4AP41235 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
HNF4AP41235 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.78□□□□□ -0.04
HNF4AP41235 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.78□□□□□ -0.04
HNF4AP41235 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.78□□□□□ -0.04
HNF4AP41235 AL049840.4-201ENST00000602422 811 ntBASIC14.78□□□□□ -0.04
HNF4AP41235 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.78□□□□□ -0.04
HNF4AP41235 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.78□□□□□ -0.04
HNF4AP41235 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 CICP4-201ENST00000447359 2812 ntBASIC14.78□□□□□ -0.04
HNF4AP41235 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HNF4AP41235 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HNF4AP41235 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.77□□□□□ -0.04
HNF4AP41235 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.77□□□□□ -0.04
HNF4AP41235 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.04
HNF4AP41235 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.77□□□□□ -0.04
HNF4AP41235 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.77□□□□□ -0.04
HNF4AP41235 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
HNF4AP41235 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.77□□□□□ -0.04
HNF4AP41235 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
HNF4AP41235 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
HNF4AP41235 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HNF4AP41235 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.77□□□□□ -0.04
HNF4AP41235 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HNF4AP41235 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HNF4AP41235 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 AL645937.2-201ENST00000396808 931 ntBASIC14.77□□□□□ -0.05
HNF4AP41235 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 AC087499.6-201ENST00000411576 835 ntBASIC14.77□□□□□ -0.05
HNF4AP41235 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 VDAC1P7-201ENST00000462417 847 ntBASIC14.77□□□□□ -0.05
HNF4AP41235 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.77□□□□□ -0.05
HNF4AP41235 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.77□□□□□ -0.05
HNF4AP41235 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.05
HNF4AP41235 AC107373.2-201ENST00000607735 490 ntBASIC14.77□□□□□ -0.05
HNF4AP41235 AC093726.1-201ENST00000608064 963 ntBASIC14.77□□□□□ -0.05
HNF4AP41235 AC099568.2-201ENST00000609194 695 ntBASIC14.77□□□□□ -0.05
HNF4AP41235 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.77□□□□□ -0.05
HNF4AP41235 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
HNF4AP41235 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.77□□□□□ -0.05
HNF4AP41235 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.77□□□□□ -0.05
HNF4AP41235 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HNF4AP41235 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
HNF4AP41235 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
HNF4AP41235 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HNF4AP41235 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.77□□□□□ -0.05
HNF4AP41235 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms