Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HLA-DOAP06340 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
HLA-DOAP06340 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 AC020910.5-201ENST00000623668 1865 ntBASIC17.75■□□□□ 0.43
HLA-DOAP06340 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 AL138725.1-201ENST00000407347 1314 ntBASIC17.75■□□□□ 0.43
HLA-DOAP06340 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 AC009093.2-202ENST00000620513 2079 ntBASIC17.75■□□□□ 0.43
HLA-DOAP06340 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 RN7SKP230-201ENST00000365642 335 ntBASIC17.75■□□□□ 0.43
HLA-DOAP06340 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 HIST2H2BC-201ENST00000498492 580 ntBASIC17.75■□□□□ 0.43
HLA-DOAP06340 AC005740.2-201ENST00000511085 419 ntBASIC17.75■□□□□ 0.43
HLA-DOAP06340 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HLA-DOAP06340 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HLA-DOAP06340 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 NKAIN1P1-201ENST00000435754 582 ntBASIC17.74■□□□□ 0.43
HLA-DOAP06340 AC005077.2-201ENST00000449786 690 ntBASIC17.74■□□□□ 0.43
HLA-DOAP06340 IGHJ2P-201ENST00000454480 60 ntBASIC17.74■□□□□ 0.43
HLA-DOAP06340 TUBB8P8-201ENST00000458717 1058 ntBASIC17.74■□□□□ 0.43
HLA-DOAP06340 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 AC100827.2-201ENST00000563214 1194 ntBASIC17.74■□□□□ 0.43
HLA-DOAP06340 NDUFV2P1-201ENST00000596415 907 ntBASIC17.74■□□□□ 0.43
HLA-DOAP06340 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 SHC1P1-201ENST00000425230 1745 ntBASIC17.74■□□□□ 0.43
HLA-DOAP06340 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.74■□□□□ 0.43
HLA-DOAP06340 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HLA-DOAP06340 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
HLA-DOAP06340 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HLA-DOAP06340 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.73■□□□□ 0.43
HLA-DOAP06340 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DOAP06340 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DOAP06340 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DOAP06340 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DOAP06340 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.73■□□□□ 0.43
HLA-DOAP06340 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HLA-DOAP06340 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.73■□□□□ 0.43
HLA-DOAP06340 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms