Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18.69■□□□□ 0.58
CACNA1FO60840 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.69■□□□□ 0.58
CACNA1FO60840 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.69■□□□□ 0.58
CACNA1FO60840 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.69■□□□□ 0.58
CACNA1FO60840 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CACNA1FO60840 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.69■□□□□ 0.58
CACNA1FO60840 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 AP001267.2-201ENST00000532619 2086 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1FO60840 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1FO60840 DPM3-202ENST00000368399 517 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC18.68■□□□□ 0.58
CACNA1FO60840 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1FO60840 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.68■□□□□ 0.58
CACNA1FO60840 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1FO60840 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.68■□□□□ 0.58
CACNA1FO60840 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 AL451050.2-201ENST00000606967 682 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CACNA1FO60840 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 AC215219.1-201ENST00000400706 1817 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.68■□□□□ 0.58
CACNA1FO60840 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1FO60840 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.68■□□□□ 0.58
CACNA1FO60840 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CACNA1FO60840 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 AC104982.3-201ENST00000581995 514 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 AC244093.1-201ENST00000610837 814 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 AL157813.1-201ENST00000612996 587 ntBASIC18.68■□□□□ 0.58
CACNA1FO60840 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1FO60840 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC18.67■□□□□ 0.58
CACNA1FO60840 AGGF1P1-201ENST00000509500 2073 ntBASIC18.67■□□□□ 0.58
CACNA1FO60840 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CACNA1FO60840 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 XBP1P1-201ENST00000436573 652 ntBASIC18.67■□□□□ 0.58
CACNA1FO60840 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CACNA1FO60840 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.67■□□□□ 0.58
CACNA1FO60840 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC18.67■□□□□ 0.58
CACNA1FO60840 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CACNA1FO60840 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 GOLGA8VP-201ENST00000559009 1798 ntBASIC18.67■□□□□ 0.58
CACNA1FO60840 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.67■□□□□ 0.58
CACNA1FO60840 AC064801.2-201ENST00000625052 1303 ntBASIC18.67■□□□□ 0.58
CACNA1FO60840 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CACNA1FO60840 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1FO60840 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1FO60840 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.66■□□□□ 0.58
CACNA1FO60840 AC113367.3-201ENST00000508316 1912 ntBASIC18.66■□□□□ 0.58
CACNA1FO60840 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1FO60840 AC006122.1-201ENST00000493323 440 ntBASIC18.66■□□□□ 0.58
CACNA1FO60840 AC125604.1-201ENST00000496255 707 ntBASIC18.66■□□□□ 0.58
CACNA1FO60840 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms