Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 DFFBP1-201ENST00000433250 979 ntBASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AL353779.1-201ENST00000434793 351 ntBASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 HMGN1P19-201ENST00000436976 333 ntBASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AC107373.2-201ENST00000607735 490 ntBASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AL138799.1-201ENST00000448213 1675 ntBASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AC027796.2-201ENST00000575326 344 ntBASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AC115989.2-201ENST00000578640 563 ntBASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 BRI3BPP1-201ENST00000594224 787 ntBASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AC083964.1-201ENST00000607549 630 ntBASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AJ011932.1-201ENST00000621707 465 ntBASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 FGA-203ENST00000622532 1130 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AC004777.1-201ENST00000624317 287 ntBASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS9D1Q9Y2B5 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.21■□□□□ 0.02
VPS9D1Q9Y2B5 SLC7A15P-201ENST00000424028 1363 ntBASIC15.21■□□□□ 0.02
VPS9D1Q9Y2B5 LILRP1-201ENST00000444199 1370 ntBASIC15.21■□□□□ 0.02
VPS9D1Q9Y2B5 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
VPS9D1Q9Y2B5 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VPS9D1Q9Y2B5 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
VPS9D1Q9Y2B5 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.21■□□□□ 0.02
VPS9D1Q9Y2B5 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 MIR770-201ENST00000390219 98 ntBASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
VPS9D1Q9Y2B5 AC087499.6-201ENST00000411576 835 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms