Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 AL035456.1-201ENST00000456064 1369 ntBASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 YBX2P1-201ENST00000394192 760 ntBASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 AC015922.1-201ENST00000421102 1152 ntBASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 MIR6069-201ENST00000620069 79 ntBASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms