Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 AL008638.5-201ENST00000623814 1298 ntBASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 AC105250.1-201ENST00000509378 2057 ntBASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
CCDC3Q9BQI4 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AC015818.8-201ENST00000587907 1519 ntBASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 RPSAP36-202ENST00000494591 1261 ntBASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 PRSS30P-206ENST00000641773 873 ntBASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC3Q9BQI4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AC132872.4-202ENST00000622924 2756 ntBASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 RPL5P21-201ENST00000404620 815 ntBASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AL139094.1-201ENST00000405549 1188 ntBASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AP006547.1-201ENST00000563435 692 ntBASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 AC104982.3-201ENST00000581995 514 ntBASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC3Q9BQI4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms