Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 AC067930.6-201ENST00000623257 4947 ntBASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.22■□□□□ 0.03
HDDC3Q8N4P3 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 FXNP2-201ENST00000411625 547 ntBASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 REEP1-202ENST00000453231 940 ntTSL 2 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 AL391280.1-201ENST00000506969 1062 ntBASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 AC105129.2-201ENST00000559536 390 ntBASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 RN7SL713P-201ENST00000582127 302 ntBASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 PPY2P-201ENST00000582808 702 ntBASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.21■□□□□ 0.03
HDDC3Q8N4P3 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HDDC3Q8N4P3 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.21■□□□□ 0.02
HDDC3Q8N4P3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HDDC3Q8N4P3 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HDDC3Q8N4P3 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.21■□□□□ 0.02
HDDC3Q8N4P3 MST1L-201ENST00000442552 2185 ntBASIC15.21■□□□□ 0.02
HDDC3Q8N4P3 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 AC087481.3-201ENST00000602886 1894 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 AL023775.1-201ENST00000454907 1746 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 GHSR-202ENST00000427970 912 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 RN7SL769P-201ENST00000469386 295 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 HIST2H2BC-201ENST00000498492 580 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 DUX4L47-201ENST00000566374 394 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 AC004466.1-201ENST00000599515 1080 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 AL096828.3-201ENST00000615354 462 ntBASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HDDC3Q8N4P3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 208 ms