Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 AC022532.1-201ENST00000624563 1728 ntBASIC18.01■□□□□ 0.47
CTR9Q6PD62 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 AL109954.1-202ENST00000564051 2148 ntBASIC18.01■□□□□ 0.47
CTR9Q6PD62 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 FAM21FP-201ENST00000426241 1131 ntBASIC18.01■□□□□ 0.47
CTR9Q6PD62 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 AC023310.1-201ENST00000554836 735 ntBASIC18.01■□□□□ 0.47
CTR9Q6PD62 HNRNPA1P48-202ENST00000565308 961 ntBASIC18.01■□□□□ 0.47
CTR9Q6PD62 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CTR9Q6PD62 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CTR9Q6PD62 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18■□□□□ 0.47
CTR9Q6PD62 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CTR9Q6PD62 YBX1P6-201ENST00000442962 1002 ntBASIC18■□□□□ 0.47
CTR9Q6PD62 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18■□□□□ 0.47
CTR9Q6PD62 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC18■□□□□ 0.47
CTR9Q6PD62 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC18■□□□□ 0.47
CTR9Q6PD62 AC009542.2-202ENST00000619004 1067 ntBASIC18■□□□□ 0.47
CTR9Q6PD62 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 LILRP1-201ENST00000444199 1370 ntBASIC18■□□□□ 0.47
CTR9Q6PD62 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CTR9Q6PD62 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18■□□□□ 0.47
CTR9Q6PD62 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC18■□□□□ 0.47
CTR9Q6PD62 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CTR9Q6PD62 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 CLUHP2-201ENST00000426660 1303 ntBASIC17.99■□□□□ 0.47
CTR9Q6PD62 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CTR9Q6PD62 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CTR9Q6PD62 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms