Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
CX3CL1P78423 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 CICP11-201ENST00000434745 2827 ntBASIC12.31□□□□□ -0.44
CX3CL1P78423 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CX3CL1P78423 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.31□□□□□ -0.44
CX3CL1P78423 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.31□□□□□ -0.44
CX3CL1P78423 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
CX3CL1P78423 FAM207CP-201ENST00000443486 507 ntBASIC12.31□□□□□ -0.44
CX3CL1P78423 SPTLC1P1-201ENST00000447199 261 ntBASIC12.31□□□□□ -0.44
CX3CL1P78423 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.31□□□□□ -0.44
CX3CL1P78423 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.31□□□□□ -0.44
CX3CL1P78423 SERBP1P5-201ENST00000510079 1181 ntBASIC12.31□□□□□ -0.44
CX3CL1P78423 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC12.31□□□□□ -0.44
CX3CL1P78423 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.31□□□□□ -0.44
CX3CL1P78423 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.31□□□□□ -0.44
CX3CL1P78423 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.31□□□□□ -0.44
CX3CL1P78423 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.31□□□□□ -0.44
CX3CL1P78423 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CX3CL1P78423 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CX3CL1P78423 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 AC023024.2-201ENST00000623561 1993 ntBASIC12.3□□□□□ -0.44
CX3CL1P78423 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.3□□□□□ -0.44
CX3CL1P78423 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
CX3CL1P78423 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
CX3CL1P78423 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC12.3□□□□□ -0.44
CX3CL1P78423 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.3□□□□□ -0.44
CX3CL1P78423 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 RN7SL399P-201ENST00000471648 279 ntBASIC12.3□□□□□ -0.44
CX3CL1P78423 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
CX3CL1P78423 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.3□□□□□ -0.44
CX3CL1P78423 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.3□□□□□ -0.44
CX3CL1P78423 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
CX3CL1P78423 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 LINC02560-201ENST00000596379 459 ntBASIC12.3□□□□□ -0.44
CX3CL1P78423 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 AC004233.3-201ENST00000607794 1269 ntBASIC12.3□□□□□ -0.44
CX3CL1P78423 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CX3CL1P78423 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CX3CL1P78423 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.3□□□□□ -0.44
CX3CL1P78423 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms