Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
HDAC4P56524 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.9■□□□□ 0.14
HDAC4P56524 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.9■□□□□ 0.14
HDAC4P56524 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 MIR3197-201ENST00000582241 73 ntBASIC15.9■□□□□ 0.14
HDAC4P56524 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.9■□□□□ 0.14
HDAC4P56524 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.9■□□□□ 0.14
HDAC4P56524 FGD5P1-202ENST00000614866 2498 ntBASIC15.9■□□□□ 0.14
HDAC4P56524 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.9■□□□□ 0.14
HDAC4P56524 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.9■□□□□ 0.14
HDAC4P56524 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC4P56524 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
HDAC4P56524 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HDAC4P56524 CICP23-201ENST00000605013 2741 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HDAC4P56524 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 RNU1-114P-201ENST00000365297 166 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 NUS1P3-201ENST00000423502 862 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HDAC4P56524 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 ENPP7P5-201ENST00000541031 1031 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.89■□□□□ 0.13
HDAC4P56524 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.89■□□□□ 0.13
HDAC4P56524 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.89■□□□□ 0.13
HDAC4P56524 RPSAP52-203ENST00000622976 1023 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 CU634019.7-201ENST00000624153 1185 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 FP236241.2-201ENST00000624906 1185 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.89■□□□□ 0.13
HDAC4P56524 AL033527.5-201ENST00000641382 801 ntBASIC15.89■□□□□ 0.13
HDAC4P56524 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC4P56524 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
HDAC4P56524 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
HDAC4P56524 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC4P56524 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
HDAC4P56524 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 AL139094.1-201ENST00000405549 1188 ntBASIC15.88■□□□□ 0.13
HDAC4P56524 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.88■□□□□ 0.13
HDAC4P56524 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.88■□□□□ 0.13
HDAC4P56524 AL162726.2-201ENST00000438986 1017 ntBASIC15.88■□□□□ 0.13
HDAC4P56524 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.88■□□□□ 0.13
HDAC4P56524 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
HDAC4P56524 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC4P56524 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.88■□□□□ 0.13
HDAC4P56524 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC4P56524 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.88■□□□□ 0.13
HDAC4P56524 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms