Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC005229.1-201ENST00000392885 409 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 AL035633.1-201ENST00000406139 838 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 AL512384.1-201ENST00000406683 331 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 USP32P1-208ENST00000506594 1164 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.75■□□□□ 0.11
PTPN9P43378 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.75■□□□□ 0.11
PTPN9P43378 AC145423.3-201ENST00000615987 467 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 AL138709.1-201ENST00000614840 1693 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 AC018529.2-202ENST00000611482 3087 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PTPN9P43378 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
PTPN9P43378 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 COX20P2-201ENST00000452636 358 ntBASIC15.74■□□□□ 0.11
PTPN9P43378 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.74■□□□□ 0.11
PTPN9P43378 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.74■□□□□ 0.11
PTPN9P43378 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.74■□□□□ 0.11
PTPN9P43378 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.74■□□□□ 0.11
PTPN9P43378 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.74■□□□□ 0.11
PTPN9P43378 IGHV3-72-202ENST00000621503 303 ntBASIC15.74■□□□□ 0.11
PTPN9P43378 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 AC105233.6-201ENST00000642093 218 ntBASIC15.74■□□□□ 0.11
PTPN9P43378 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTPN9P43378 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.74■□□□□ 0.11
PTPN9P43378 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.74■□□□□ 0.11
PTPN9P43378 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTPN9P43378 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PTPN9P43378 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.11
PTPN9P43378 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PTPN9P43378 NME2P1-201ENST00000426182 414 ntBASIC15.73■□□□□ 0.11
PTPN9P43378 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.73■□□□□ 0.11
PTPN9P43378 TTTY23B-201ENST00000442790 549 ntBASIC15.73■□□□□ 0.11
PTPN9P43378 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.73■□□□□ 0.11
PTPN9P43378 AC106760.1-201ENST00000508690 800 ntBASIC15.73■□□□□ 0.11
PTPN9P43378 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms