Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
MSX2P35548 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX2P35548 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX2P35548 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
MSX2P35548 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX2P35548 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
MSX2P35548 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.56□□□□□ -0.08
MSX2P35548 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
MSX2P35548 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.56□□□□□ -0.08
MSX2P35548 AC087386.2-201ENST00000623212 4637 ntBASIC14.56□□□□□ -0.08
MSX2P35548 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.56□□□□□ -0.08
MSX2P35548 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 MRPL3P1-201ENST00000400109 1033 ntBASIC14.56□□□□□ -0.08
MSX2P35548 TARDBPP1-201ENST00000442013 1203 ntBASIC14.56□□□□□ -0.08
MSX2P35548 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.56□□□□□ -0.08
MSX2P35548 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.56□□□□□ -0.08
MSX2P35548 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.56□□□□□ -0.08
MSX2P35548 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.56□□□□□ -0.08
MSX2P35548 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.56□□□□□ -0.08
MSX2P35548 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
MSX2P35548 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.56□□□□□ -0.08
MSX2P35548 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 PPT1-213ENST00000641319 2388 ntBASIC14.56□□□□□ -0.08
MSX2P35548 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX2P35548 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX2P35548 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
MSX2P35548 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX2P35548 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
MSX2P35548 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
MSX2P35548 AC027612.1-201ENST00000445234 2395 ntBASIC14.55□□□□□ -0.08
MSX2P35548 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX2P35548 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
MSX2P35548 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX2P35548 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX2P35548 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX2P35548 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 AL355306.1-201ENST00000415580 579 ntBASIC14.55□□□□□ -0.08
MSX2P35548 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX2P35548 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 HIST3H2BA-201ENST00000436555 524 ntBASIC14.55□□□□□ -0.08
MSX2P35548 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX2P35548 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 KRT126P-201ENST00000549467 1181 ntBASIC14.55□□□□□ -0.08
MSX2P35548 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC14.55□□□□□ -0.08
MSX2P35548 AC243562.1-201ENST00000560672 389 ntBASIC14.55□□□□□ -0.08
MSX2P35548 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
MSX2P35548 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.55□□□□□ -0.08
MSX2P35548 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.55□□□□□ -0.08
MSX2P35548 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.55□□□□□ -0.08
MSX2P35548 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
MSX2P35548 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX2P35548 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
MSX2P35548 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms