Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA3P32297 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA3P32297 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA3P32297 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA3P32297 MEP1AP4-201ENST00000423244 1087 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CHRNA3P32297 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA3P32297 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA3P32297 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.06■□□□□ 0.16
CHRNA3P32297 AC023310.3-201ENST00000557027 670 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 AC100756.1-201ENST00000562736 682 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA3P32297 AC138749.3-201ENST00000567691 622 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.06■□□□□ 0.16
CHRNA3P32297 AC140912.1-201ENST00000577171 1054 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA3P32297 AC012645.4-201ENST00000610691 1061 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 AC116165.1-201ENST00000611806 668 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CHRNA3P32297 AL645728.2-202ENST00000641679 227 ntBASIC16.06■□□□□ 0.16
CHRNA3P32297 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA3P32297 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA3P32297 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CHRNA3P32297 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.06■□□□□ 0.16
CHRNA3P32297 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.05■□□□□ 0.16
CHRNA3P32297 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.05■□□□□ 0.16
CHRNA3P32297 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CHRNA3P32297 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.05■□□□□ 0.16
CHRNA3P32297 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 MEIS3P1-201ENST00000495167 958 ntBASIC16.05■□□□□ 0.16
CHRNA3P32297 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 AC055876.2-201ENST00000531834 546 ntBASIC16.05■□□□□ 0.16
CHRNA3P32297 CHCHD2P3-201ENST00000603038 451 ntBASIC16.05■□□□□ 0.16
CHRNA3P32297 LINC01115-203ENST00000606068 577 ntBASIC16.05■□□□□ 0.16
CHRNA3P32297 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.05■□□□□ 0.16
CHRNA3P32297 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.05■□□□□ 0.16
CHRNA3P32297 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 AC113367.3-201ENST00000508316 1912 ntBASIC16.05■□□□□ 0.16
CHRNA3P32297 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CHRNA3P32297 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CHRNA3P32297 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CHRNA3P32297 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA3P32297 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CHRNA3P32297 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.04■□□□□ 0.16
CHRNA3P32297 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CHRNA3P32297 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CHRNA3P32297 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
CHRNA3P32297 REXO1L4P-201ENST00000605109 1937 ntBASIC16.04■□□□□ 0.16
CHRNA3P32297 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.04■□□□□ 0.16
CHRNA3P32297 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.04■□□□□ 0.16
CHRNA3P32297 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.04■□□□□ 0.16
CHRNA3P32297 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
CHRNA3P32297 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.04■□□□□ 0.16
CHRNA3P32297 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.04■□□□□ 0.16
CHRNA3P32297 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 RN7SL692P-201ENST00000464677 288 ntBASIC16.04■□□□□ 0.16
CHRNA3P32297 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CHRNA3P32297 SLED1-202ENST00000512051 380 ntBASIC16.04■□□□□ 0.16
CHRNA3P32297 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA3P32297 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms