Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXD3P31249 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC11.78□□□□□ -0.52
HOXD3P31249 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXD3P31249 AL513477.1-201ENST00000602865 2407 ntBASIC11.78□□□□□ -0.52
HOXD3P31249 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXD3P31249 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 ANKRD26P3-201ENST00000454044 2748 ntBASIC11.78□□□□□ -0.52
HOXD3P31249 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXD3P31249 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
HOXD3P31249 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXD3P31249 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXD3P31249 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXD3P31249 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXD3P31249 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 KRT90P-201ENST00000549264 1064 ntBASIC11.78□□□□□ -0.52
HOXD3P31249 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
HOXD3P31249 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC11.78□□□□□ -0.52
HOXD3P31249 RN7SL560P-201ENST00000577943 264 ntBASIC11.78□□□□□ -0.52
HOXD3P31249 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.78□□□□□ -0.52
HOXD3P31249 AC103810.3-201ENST00000583567 96 ntBASIC11.78□□□□□ -0.52
HOXD3P31249 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXD3P31249 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXD3P31249 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
HOXD3P31249 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXD3P31249 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 MYO15B-237ENST00000642007 4893 ntBASIC11.78□□□□□ -0.52
HOXD3P31249 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
HOXD3P31249 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXD3P31249 STRN-202ENST00000379213 2254 ntTSL 5 BASIC11.77□□□□□ -0.52
HOXD3P31249 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.77□□□□□ -0.52
HOXD3P31249 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXD3P31249 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.77□□□□□ -0.52
HOXD3P31249 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC11.77□□□□□ -0.52
HOXD3P31249 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.52
HOXD3P31249 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HOXD3P31249 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXD3P31249 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.52
HOXD3P31249 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC11.77□□□□□ -0.52
HOXD3P31249 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXD3P31249 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HOXD3P31249 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXD3P31249 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXD3P31249 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
HOXD3P31249 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 AL645937.2-201ENST00000396808 931 ntBASIC11.77□□□□□ -0.53
HOXD3P31249 PGGT1BP2-201ENST00000398621 1028 ntBASIC11.77□□□□□ -0.53
HOXD3P31249 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 OLR1-203ENST00000432556 950 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXD3P31249 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC11.77□□□□□ -0.53
HOXD3P31249 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC11.77□□□□□ -0.53
HOXD3P31249 AC022137.2-201ENST00000503482 481 ntBASIC11.77□□□□□ -0.53
HOXD3P31249 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC11.77□□□□□ -0.53
HOXD3P31249 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC11.77□□□□□ -0.53
HOXD3P31249 AC079316.1-201ENST00000548397 411 ntBASIC11.77□□□□□ -0.53
HOXD3P31249 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXD3P31249 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXD3P31249 MIR3615-201ENST00000581999 87 ntBASIC11.77□□□□□ -0.53
HOXD3P31249 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.77□□□□□ -0.53
HOXD3P31249 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC11.77□□□□□ -0.53
HOXD3P31249 RHOXF1P1-202ENST00000635473 501 ntBASIC11.77□□□□□ -0.53
HOXD3P31249 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms