Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RXRBP28702 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.32■□□□□ 0.68
RXRBP28702 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 RNVU1-8-201ENST00000364272 125 ntBASIC19.31■□□□□ 0.68
RXRBP28702 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 SAT1-201ENST00000379251 801 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 SAT1-202ENST00000379253 909 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 SAT1-203ENST00000379254 868 ntTSL 3 BASIC19.31■□□□□ 0.68
RXRBP28702 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 KRT18P4-201ENST00000422599 1288 ntBASIC19.31■□□□□ 0.68
RXRBP28702 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC19.31■□□□□ 0.68
RXRBP28702 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC19.31■□□□□ 0.68
RXRBP28702 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC19.31■□□□□ 0.68
RXRBP28702 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RXRBP28702 AC004801.1-201ENST00000549557 360 ntBASIC19.31■□□□□ 0.68
RXRBP28702 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
RXRBP28702 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC19.31■□□□□ 0.68
RXRBP28702 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC19.31■□□□□ 0.68
RXRBP28702 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
RXRBP28702 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RXRBP28702 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC19.3■□□□□ 0.68
RXRBP28702 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RXRBP28702 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
RXRBP28702 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RXRBP28702 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RXRBP28702 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RXRBP28702 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 CFL1P6-201ENST00000400899 494 ntBASIC19.3■□□□□ 0.68
RXRBP28702 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC19.3■□□□□ 0.68
RXRBP28702 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC19.3■□□□□ 0.68
RXRBP28702 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC19.3■□□□□ 0.68
RXRBP28702 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RXRBP28702 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC19.3■□□□□ 0.68
RXRBP28702 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC19.3■□□□□ 0.68
RXRBP28702 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC19.3■□□□□ 0.68
RXRBP28702 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC19.3■□□□□ 0.68
RXRBP28702 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RXRBP28702 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RXRBP28702 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RXRBP28702 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC19.3■□□□□ 0.68
RXRBP28702 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RXRBP28702 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RXRBP28702 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
RXRBP28702 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC19.29■□□□□ 0.68
RXRBP28702 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
RXRBP28702 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RXRBP28702 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
RXRBP28702 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RXRBP28702 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.29■□□□□ 0.68
RXRBP28702 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC19.29■□□□□ 0.68
RXRBP28702 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
RXRBP28702 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.29■□□□□ 0.68
RXRBP28702 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC19.29■□□□□ 0.68
RXRBP28702 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC19.29■□□□□ 0.68
RXRBP28702 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC19.29■□□□□ 0.68
RXRBP28702 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.29■□□□□ 0.68
RXRBP28702 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 RN7SL147P-201ENST00000487345 298 ntBASIC19.29■□□□□ 0.68
RXRBP28702 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RXRBP28702 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC19.29■□□□□ 0.68
RXRBP28702 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC19.29■□□□□ 0.68
RXRBP28702 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
RXRBP28702 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RXRBP28702 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RXRBP28702 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RXRBP28702 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RXRBP28702 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms