Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.31■□□□□ 0.36
SMARCA1P28370 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.31■□□□□ 0.36
SMARCA1P28370 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.31■□□□□ 0.36
SMARCA1P28370 GCOM2-201ENST00000509133 1104 ntBASIC17.31■□□□□ 0.36
SMARCA1P28370 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.31■□□□□ 0.36
SMARCA1P28370 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 AC008825.2-201ENST00000603374 718 ntBASIC17.31■□□□□ 0.36
SMARCA1P28370 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.31■□□□□ 0.36
SMARCA1P28370 AC013726.1-201ENST00000563747 2285 ntBASIC17.31■□□□□ 0.36
SMARCA1P28370 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SMARCA1P28370 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SMARCA1P28370 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.3■□□□□ 0.36
SMARCA1P28370 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
SMARCA1P28370 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.3■□□□□ 0.36
SMARCA1P28370 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.3■□□□□ 0.36
SMARCA1P28370 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.3■□□□□ 0.36
SMARCA1P28370 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.3■□□□□ 0.36
SMARCA1P28370 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.3■□□□□ 0.36
SMARCA1P28370 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.3■□□□□ 0.36
SMARCA1P28370 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SMARCA1P28370 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.3■□□□□ 0.36
SMARCA1P28370 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.3■□□□□ 0.36
SMARCA1P28370 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.3■□□□□ 0.36
SMARCA1P28370 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SMARCA1P28370 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SMARCA1P28370 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SMARCA1P28370 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SMARCA1P28370 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.3■□□□□ 0.36
SMARCA1P28370 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SMARCA1P28370 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.29■□□□□ 0.36
SMARCA1P28370 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.29■□□□□ 0.36
SMARCA1P28370 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
SMARCA1P28370 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.29■□□□□ 0.36
SMARCA1P28370 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.29■□□□□ 0.36
SMARCA1P28370 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.29■□□□□ 0.36
SMARCA1P28370 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 AC244107.1-201ENST00000442033 332 ntBASIC17.29■□□□□ 0.36
SMARCA1P28370 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.29■□□□□ 0.36
SMARCA1P28370 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.29■□□□□ 0.36
SMARCA1P28370 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.29■□□□□ 0.36
SMARCA1P28370 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.29■□□□□ 0.36
SMARCA1P28370 PPY2P-201ENST00000582808 702 ntBASIC17.29■□□□□ 0.36
SMARCA1P28370 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SMARCA1P28370 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.29■□□□□ 0.36
SMARCA1P28370 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SMARCA1P28370 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms