Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.47□□□□□ -0.09
SDC1P18827 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.47□□□□□ -0.09
SDC1P18827 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.47□□□□□ -0.09
SDC1P18827 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.47□□□□□ -0.09
SDC1P18827 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SDC1P18827 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SDC1P18827 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SDC1P18827 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.47□□□□□ -0.09
SDC1P18827 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.47□□□□□ -0.09
SDC1P18827 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SDC1P18827 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.47□□□□□ -0.09
SDC1P18827 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SDC1P18827 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.46□□□□□ -0.09
SDC1P18827 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.46□□□□□ -0.09
SDC1P18827 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.46□□□□□ -0.09
SDC1P18827 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.46□□□□□ -0.09
SDC1P18827 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
SDC1P18827 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.46□□□□□ -0.09
SDC1P18827 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.46□□□□□ -0.09
SDC1P18827 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
SDC1P18827 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SDC1P18827 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SDC1P18827 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.46□□□□□ -0.09
SDC1P18827 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.46□□□□□ -0.09
SDC1P18827 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.46□□□□□ -0.09
SDC1P18827 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.46□□□□□ -0.09
SDC1P18827 AL512638.1-201ENST00000457493 794 ntBASIC14.46□□□□□ -0.09
SDC1P18827 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.46□□□□□ -0.09
SDC1P18827 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.46□□□□□ -0.09
SDC1P18827 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.46□□□□□ -0.09
SDC1P18827 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.46□□□□□ -0.09
SDC1P18827 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
SDC1P18827 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.46□□□□□ -0.09
SDC1P18827 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SDC1P18827 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
SDC1P18827 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 GRK6P1-201ENST00000400595 1711 ntBASIC14.46□□□□□ -0.1
SDC1P18827 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
SDC1P18827 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.46□□□□□ -0.1
SDC1P18827 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SDC1P18827 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.46□□□□□ -0.1
SDC1P18827 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 AC126755.1-201ENST00000525846 6405 ntBASIC14.45□□□□□ -0.1
SDC1P18827 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.45□□□□□ -0.1
SDC1P18827 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.45□□□□□ -0.1
SDC1P18827 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SDC1P18827 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms