Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC15.27■□□□□ 0.03
COL6A3P12111 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
COL6A3P12111 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC15.27■□□□□ 0.03
COL6A3P12111 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 AC079414.2-201ENST00000567157 1104 ntBASIC15.27■□□□□ 0.03
COL6A3P12111 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC15.27■□□□□ 0.03
COL6A3P12111 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 AL513523.2-202ENST00000427283 2040 ntBASIC15.27■□□□□ 0.03
COL6A3P12111 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL6A3P12111 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL6A3P12111 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC15.26■□□□□ 0.03
COL6A3P12111 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 AC131206.1-201ENST00000538078 1211 ntBASIC15.26■□□□□ 0.03
COL6A3P12111 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC15.26■□□□□ 0.03
COL6A3P12111 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC15.26■□□□□ 0.03
COL6A3P12111 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
COL6A3P12111 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.26■□□□□ 0.03
COL6A3P12111 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL6A3P12111 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC15.26■□□□□ 0.03
COL6A3P12111 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 OR2A1-AS1-203ENST00000468575 568 ntBASIC15.26■□□□□ 0.03
COL6A3P12111 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC15.26■□□□□ 0.03
COL6A3P12111 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC15.26■□□□□ 0.03
COL6A3P12111 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC15.26■□□□□ 0.03
COL6A3P12111 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL6A3P12111 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL6A3P12111 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.26■□□□□ 0.03
COL6A3P12111 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.26■□□□□ 0.03
COL6A3P12111 AC239600.1-201ENST00000603201 462 ntBASIC15.26■□□□□ 0.03
COL6A3P12111 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL6A3P12111 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 RPL18AP8-201ENST00000486071 528 ntBASIC15.25■□□□□ 0.03
COL6A3P12111 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC15.25■□□□□ 0.03
COL6A3P12111 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC15.25■□□□□ 0.03
COL6A3P12111 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 AC068880.1-201ENST00000507289 2297 ntBASIC15.25■□□□□ 0.03
COL6A3P12111 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
COL6A3P12111 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 AL390961.4-201ENST00000623958 2535 ntBASIC15.25■□□□□ 0.03
COL6A3P12111 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 MIR611-201ENST00000384869 67 ntBASIC15.25■□□□□ 0.03
COL6A3P12111 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL6A3P12111 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.25■□□□□ 0.03
COL6A3P12111 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms