Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.91■□□□□ 0.46
HMGB1P09429 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGB1P09429 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HMGB1P09429 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
HMGB1P09429 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HMGB1P09429 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGB1P09429 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HMGB1P09429 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGB1P09429 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGB1P09429 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 CLUHP6-201ENST00000580789 941 ntBASIC17.91■□□□□ 0.46
HMGB1P09429 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HMGB1P09429 AL033527.5-201ENST00000641382 801 ntBASIC17.91■□□□□ 0.46
HMGB1P09429 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HMGB1P09429 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGB1P09429 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB1P09429 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HMGB1P09429 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGB1P09429 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HMGB1P09429 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.9■□□□□ 0.46
HMGB1P09429 CRB3P1-201ENST00000449338 276 ntBASIC17.9■□□□□ 0.46
HMGB1P09429 AC022137.2-201ENST00000503482 481 ntBASIC17.9■□□□□ 0.46
HMGB1P09429 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.9■□□□□ 0.46
HMGB1P09429 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.9■□□□□ 0.46
HMGB1P09429 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.9■□□□□ 0.46
HMGB1P09429 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HMGB1P09429 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HMGB1P09429 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB1P09429 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGB1P09429 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB1P09429 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.46
HMGB1P09429 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
HMGB1P09429 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.46
HMGB1P09429 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 LRRC59-203ENST00000576448 1531 ntBASIC17.89■□□□□ 0.45
HMGB1P09429 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
HMGB1P09429 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGB1P09429 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.89■□□□□ 0.45
HMGB1P09429 WASH4P-201ENST00000564273 1246 ntBASIC17.89■□□□□ 0.45
HMGB1P09429 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.89■□□□□ 0.45
HMGB1P09429 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms