Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 DNAJB3-201ENST00000446806 729 ntBASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 AC023141.5-201ENST00000458585 616 ntBASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 AP001059.3-201ENST00000619053 235 ntBASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 AL022342.1-201ENST00000400363 863 ntBASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 AL512361.1-201ENST00000554200 418 ntBASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 AC074044.1-201ENST00000609673 707 ntBASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM49D1C9J1S8 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM49D1C9J1S8 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 AC092135.3-201ENST00000624151 1846 ntBASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM49D1C9J1S8 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms