Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AC018665.1-201ENST00000622927 1362 ntBASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AL139094.1-201ENST00000405549 1188 ntBASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 KLF2P2-201ENST00000416807 1039 ntBASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 KRT43P-201ENST00000434019 910 ntBASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 KRT17P8-201ENST00000540749 863 ntBASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 AC012508.2-201ENST00000567613 1472 ntBASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM39Q9HCM9 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 RNU1-114P-201ENST00000365297 166 ntBASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.12■□□□□ 0.01
TRIM39Q9HCM9 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms