Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 HSPB1P2-201ENST00000448722 546 ntBASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 MIR4683-201ENST00000579659 81 ntBASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 AC138696.2-201ENST00000607376 223 ntBASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 AC020910.5-201ENST00000623668 1865 ntBASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC60Q8IWA6 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 RN7SKP230-201ENST00000365642 335 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AL136309.1-201ENST00000403917 691 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AC004945.1-201ENST00000416738 983 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AC079178.1-201ENST00000420915 656 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AC099548.2-209ENST00000480264 625 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 FAM8A2P-201ENST00000528813 1142 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AC243960.2-201ENST00000600996 747 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 AL118558.3-201ENST00000607414 1079 ntBASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC60Q8IWA6 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 AC022532.1-201ENST00000624563 1728 ntBASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 AC104306.2-201ENST00000451877 341 ntBASIC16.79■□□□□ 0.28
CCDC60Q8IWA6 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms