Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.12■□□□□ 0.33
TPM4P67936 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TPM4P67936 AL133267.1-201ENST00000398220 340 ntBASIC17.12■□□□□ 0.33
TPM4P67936 SPDYE17-201ENST00000412399 783 ntBASIC17.12■□□□□ 0.33
TPM4P67936 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.12■□□□□ 0.33
TPM4P67936 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.12■□□□□ 0.33
TPM4P67936 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.12■□□□□ 0.33
TPM4P67936 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.12■□□□□ 0.33
TPM4P67936 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.12■□□□□ 0.33
TPM4P67936 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.12■□□□□ 0.33
TPM4P67936 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.12■□□□□ 0.33
TPM4P67936 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 AC084121.4-201ENST00000641598 221 ntBASIC17.12■□□□□ 0.33
TPM4P67936 AF228730.8-201ENST00000642140 221 ntBASIC17.12■□□□□ 0.33
TPM4P67936 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TPM4P67936 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TPM4P67936 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM4P67936 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
TPM4P67936 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC17.11■□□□□ 0.33
TPM4P67936 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC17.11■□□□□ 0.33
TPM4P67936 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TPM4P67936 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TPM4P67936 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.11■□□□□ 0.33
TPM4P67936 ACTG1P14-201ENST00000446382 1122 ntBASIC17.11■□□□□ 0.33
TPM4P67936 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.11■□□□□ 0.33
TPM4P67936 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.11■□□□□ 0.33
TPM4P67936 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.11■□□□□ 0.33
TPM4P67936 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.11■□□□□ 0.33
TPM4P67936 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.11■□□□□ 0.33
TPM4P67936 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.11■□□□□ 0.33
TPM4P67936 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.11■□□□□ 0.33
TPM4P67936 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.11■□□□□ 0.33
TPM4P67936 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
TPM4P67936 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC17.11■□□□□ 0.33
TPM4P67936 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TPM4P67936 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TPM4P67936 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms