Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC006449.5-201ENST00000610658 2098 ntBASIC17.5■□□□□ 0.39
CTCFP49711 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CTCFP49711 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTCFP49711 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CTCFP49711 AL136379.1-201ENST00000623471 2642 ntBASIC17.5■□□□□ 0.39
CTCFP49711 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 AL662844.4-201ENST00000606367 2838 ntBASIC17.49■□□□□ 0.39
CTCFP49711 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CTCFP49711 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CTCFP49711 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.49■□□□□ 0.39
CTCFP49711 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC17.49■□□□□ 0.39
CTCFP49711 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 FAM58BP-201ENST00000439056 645 ntBASIC17.49■□□□□ 0.39
CTCFP49711 HLA-J-204ENST00000495278 958 ntBASIC17.49■□□□□ 0.39
CTCFP49711 POLD4-208ENST00000532830 904 ntTSL 3 BASIC17.49■□□□□ 0.39
CTCFP49711 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 AC009955.4-201ENST00000597192 544 ntBASIC17.49■□□□□ 0.39
CTCFP49711 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.49■□□□□ 0.39
CTCFP49711 MIR6769A-201ENST00000617340 73 ntBASIC17.49■□□□□ 0.39
CTCFP49711 AC025262.2-201ENST00000623975 1056 ntBASIC17.49■□□□□ 0.39
CTCFP49711 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
CTCFP49711 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.49■□□□□ 0.39
CTCFP49711 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CTCFP49711 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTCFP49711 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CTCFP49711 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.48■□□□□ 0.39
CTCFP49711 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CTCFP49711 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.48■□□□□ 0.39
CTCFP49711 AP000358.1-201ENST00000456260 156 ntBASIC17.48■□□□□ 0.39
CTCFP49711 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.48■□□□□ 0.39
CTCFP49711 LINC00634-202ENST00000505157 222 ntBASIC17.48■□□□□ 0.39
CTCFP49711 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC17.48■□□□□ 0.39
CTCFP49711 CCNC-217ENST00000523985 958 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 MIR4783-201ENST00000580343 82 ntBASIC17.48■□□□□ 0.39
CTCFP49711 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC17.48■□□□□ 0.39
CTCFP49711 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 AL451007.2-201ENST00000632004 563 ntBASIC17.48■□□□□ 0.39
CTCFP49711 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CTCFP49711 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTCFP49711 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms