Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC19.68■□□□□ 0.74
COL3A1P02461 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL3A1P02461 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
COL3A1P02461 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL3A1P02461 SKA2-202ENST00000437036 625 ntTSL 2 BASIC19.67■□□□□ 0.74
COL3A1P02461 RPL18P13-201ENST00000478088 569 ntBASIC19.67■□□□□ 0.74
COL3A1P02461 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC19.67■□□□□ 0.74
COL3A1P02461 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC19.67■□□□□ 0.74
COL3A1P02461 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 AP001258.2-201ENST00000529891 490 ntBASIC19.67■□□□□ 0.74
COL3A1P02461 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
COL3A1P02461 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
COL3A1P02461 MVK-217ENST00000639206 367 ntTSL 5 BASIC19.67■□□□□ 0.74
COL3A1P02461 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 BANP-201ENST00000286122 2368 ntTSL 5 BASIC19.67■□□□□ 0.74
COL3A1P02461 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC19.67■□□□□ 0.74
COL3A1P02461 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.67■□□□□ 0.74
COL3A1P02461 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL3A1P02461 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL3A1P02461 ACTG1P2-201ENST00000415776 1125 ntBASIC19.67■□□□□ 0.74
COL3A1P02461 ACTG1P11-201ENST00000425411 1125 ntBASIC19.67■□□□□ 0.74
COL3A1P02461 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC19.67■□□□□ 0.74
COL3A1P02461 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC19.67■□□□□ 0.74
COL3A1P02461 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC19.67■□□□□ 0.74
COL3A1P02461 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL3A1P02461 AC026740.1-201ENST00000607068 791 ntBASIC19.67■□□□□ 0.74
COL3A1P02461 AC090164.2-201ENST00000611487 516 ntBASIC19.67■□□□□ 0.74
COL3A1P02461 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL3A1P02461 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.67■□□□□ 0.74
COL3A1P02461 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC19.66■□□□□ 0.74
COL3A1P02461 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 AL133338.1-201ENST00000565695 1517 ntBASIC19.66■□□□□ 0.74
COL3A1P02461 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC19.66■□□□□ 0.74
COL3A1P02461 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.66■□□□□ 0.74
COL3A1P02461 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC19.66■□□□□ 0.74
COL3A1P02461 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 AC023824.1-201ENST00000562945 2975 ntBASIC19.66■□□□□ 0.74
COL3A1P02461 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC19.66■□□□□ 0.74
COL3A1P02461 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.66■□□□□ 0.74
COL3A1P02461 TUBB8P8-201ENST00000458717 1058 ntBASIC19.66■□□□□ 0.74
COL3A1P02461 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.66■□□□□ 0.74
COL3A1P02461 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
COL3A1P02461 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 AC020914.3-201ENST00000594712 304 ntBASIC19.66■□□□□ 0.74
COL3A1P02461 DDX5-235ENST00000630471 473 ntTSL 4 BASIC19.66■□□□□ 0.74
COL3A1P02461 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.66■□□□□ 0.74
COL3A1P02461 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL3A1P02461 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL3A1P02461 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL3A1P02461 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC19.65■□□□□ 0.74
COL3A1P02461 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL3A1P02461 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms