Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.6□□□□□ -0.07
PDLIM1O00151 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.6□□□□□ -0.07
PDLIM1O00151 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 KRT8P48-201ENST00000515599 1220 ntBASIC14.6□□□□□ -0.07
PDLIM1O00151 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.6□□□□□ -0.07
PDLIM1O00151 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.6□□□□□ -0.07
PDLIM1O00151 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PDLIM1O00151 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.6□□□□□ -0.07
PDLIM1O00151 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PDLIM1O00151 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PDLIM1O00151 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PDLIM1O00151 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PDLIM1O00151 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
PDLIM1O00151 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.6□□□□□ -0.07
PDLIM1O00151 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PDLIM1O00151 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.6□□□□□ -0.07
PDLIM1O00151 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.6□□□□□ -0.07
PDLIM1O00151 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 AC113367.3-201ENST00000508316 1912 ntBASIC14.59□□□□□ -0.07
PDLIM1O00151 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.59□□□□□ -0.07
PDLIM1O00151 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.59□□□□□ -0.07
PDLIM1O00151 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 AC004461.1-201ENST00000412461 403 ntBASIC14.59□□□□□ -0.07
PDLIM1O00151 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.59□□□□□ -0.07
PDLIM1O00151 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.59□□□□□ -0.07
PDLIM1O00151 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.59□□□□□ -0.07
PDLIM1O00151 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.59□□□□□ -0.07
PDLIM1O00151 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 LINC01225-203ENST00000563550 1244 ntBASIC14.59□□□□□ -0.07
PDLIM1O00151 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.59□□□□□ -0.07
PDLIM1O00151 AC079781.4-201ENST00000641908 219 ntBASIC14.59□□□□□ -0.07
PDLIM1O00151 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 FTO-214ENST00000636218 2227 ntTSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC14.59□□□□□ -0.07
PDLIM1O00151 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.59□□□□□ -0.07
PDLIM1O00151 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.59□□□□□ -0.07
PDLIM1O00151 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PDLIM1O00151 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
PDLIM1O00151 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PDLIM1O00151 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PDLIM1O00151 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.07
PDLIM1O00151 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PDLIM1O00151 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
PDLIM1O00151 AC126335.2-201ENST00000623362 4637 ntBASIC14.58□□□□□ -0.07
PDLIM1O00151 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
PDLIM1O00151 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PDLIM1O00151 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms