Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KRT8P48-201ENST00000515599 1220 ntBASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 BX640515.1-201ENST00000617215 977 ntBASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SLC9A3P3-201ENST00000457608 2229 ntBASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AL353705.2-201ENST00000428243 662 ntBASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AL592309.1-201ENST00000443127 649 ntBASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 SLC25A39P2-201ENST00000537614 270 ntBASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AP3S2-216ENST00000617003 1561 ntBASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CHMP1AQ9HD42 AC010327.5-201ENST00000586923 3061 ntBASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CHMP1AQ9HD42 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms