Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 U91328.1-201ENST00000437528 223 ntBASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 KRT18P25-201ENST00000508931 1278 ntBASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 AL158070.2-201ENST00000623713 1621 ntBASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 AP001889.1-201ENST00000525414 633 ntBASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 AL022328.1-201ENST00000610050 478 ntBASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM39Q9HCM9 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 MSTO2P-201ENST00000314835 1709 ntBASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 AC022532.1-201ENST00000624563 1728 ntBASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 CICP4-201ENST00000447359 2812 ntBASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 AC148477.4-201ENST00000613430 1793 ntBASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 AL355864.2-201ENST00000447420 863 ntBASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRIM39Q9HCM9 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms