Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 BAK1P1-201ENST00000317045 636 ntBASIC20.27■□□□□ 0.83
NPHP3Q7Z494 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 AL357563.1-201ENST00000404728 395 ntBASIC20.27■□□□□ 0.83
NPHP3Q7Z494 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 BCAS2P2-201ENST00000425064 674 ntBASIC20.27■□□□□ 0.83
NPHP3Q7Z494 AC092638.2-201ENST00000441105 947 ntBASIC20.27■□□□□ 0.83
NPHP3Q7Z494 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 MIR5196-201ENST00000578146 115 ntBASIC20.27■□□□□ 0.83
NPHP3Q7Z494 RNF146-211ENST00000609447 607 ntTSL 4 BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC20.27■□□□□ 0.83
NPHP3Q7Z494 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AC018629.1-201ENST00000623381 1736 ntBASIC20.26■□□□□ 0.83
NPHP3Q7Z494 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 PSMD4P1-201ENST00000433951 1109 ntBASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AC114947.1-202ENST00000514136 344 ntBASIC20.26■□□□□ 0.83
NPHP3Q7Z494 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 AL662844.4-201ENST00000606367 2838 ntBASIC20.26■□□□□ 0.83
NPHP3Q7Z494 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP3Q7Z494 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 RNA5SP359-201ENST00000364838 113 ntBASIC20.25■□□□□ 0.83
NPHP3Q7Z494 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 KRT18P36-201ENST00000411618 1276 ntBASIC20.25■□□□□ 0.83
NPHP3Q7Z494 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 AC138466.5-201ENST00000624002 808 ntBASIC20.25■□□□□ 0.83
NPHP3Q7Z494 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPHP3Q7Z494 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms