Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.02□□□□□ -0.01
PKNOX1P55347 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.02□□□□□ -0.01
PKNOX1P55347 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.02□□□□□ -0.01
PKNOX1P55347 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
PKNOX1P55347 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
PKNOX1P55347 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 AC010327.5-201ENST00000586923 3061 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PKNOX1P55347 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PKNOX1P55347 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 RN7SL618P-201ENST00000477850 296 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.01□□□□□ -0.01
PKNOX1P55347 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 AF228730.6-201ENST00000641497 218 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 AC084121.3-201ENST00000641716 218 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PKNOX1P55347 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PKNOX1P55347 AL121723.1-201ENST00000445194 1519 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 AC138969.3-201ENST00000546612 1459 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 AC138932.2-201ENST00000548268 1459 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 AC126755.4-201ENST00000549796 1459 ntBASIC15.01□□□□□ -0.01
PKNOX1P55347 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.01□□□□□ -0.01
PKNOX1P55347 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PKNOX1P55347 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15□□□□□ -0.01
PKNOX1P55347 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PKNOX1P55347 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
PKNOX1P55347 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 AL928921.2-201ENST00000641325 2442 ntBASIC15□□□□□ -0.01
PKNOX1P55347 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 HLA-J-203ENST00000494367 1087 ntBASIC15□□□□□ -0.01
PKNOX1P55347 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15□□□□□ -0.01
PKNOX1P55347 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 LINC01115-203ENST00000606068 577 ntBASIC15□□□□□ -0.01
PKNOX1P55347 TEX28P1-201ENST00000613479 1221 ntBASIC15□□□□□ -0.01
PKNOX1P55347 TEX28P2-201ENST00000617764 1221 ntBASIC15□□□□□ -0.01
PKNOX1P55347 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms