Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH4P55283 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH4P55283 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.52■□□□□ 0.08
CDH4P55283 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.52■□□□□ 0.08
CDH4P55283 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CDH4P55283 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CDH4P55283 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
CDH4P55283 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CDH4P55283 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
CDH4P55283 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.52■□□□□ 0.08
CDH4P55283 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.52■□□□□ 0.08
CDH4P55283 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.52■□□□□ 0.08
CDH4P55283 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.52■□□□□ 0.08
CDH4P55283 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.52■□□□□ 0.08
CDH4P55283 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CDH4P55283 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.52■□□□□ 0.08
CDH4P55283 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.52■□□□□ 0.07
CDH4P55283 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.52■□□□□ 0.07
CDH4P55283 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH4P55283 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CDH4P55283 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
CDH4P55283 FLJ16779-201ENST00000612722 7638 ntBASIC15.52■□□□□ 0.07
CDH4P55283 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH4P55283 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.07
CDH4P55283 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH4P55283 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
CDH4P55283 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CDH4P55283 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 NORAD-201ENST00000565493 5339 ntBASIC15.51■□□□□ 0.07
CDH4P55283 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH4P55283 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.51■□□□□ 0.07
CDH4P55283 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CDH4P55283 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH4P55283 AC099336.1-201ENST00000417053 1171 ntBASIC15.51■□□□□ 0.07
CDH4P55283 AC244107.1-201ENST00000442033 332 ntBASIC15.51■□□□□ 0.07
CDH4P55283 CSF2RBP1-201ENST00000447905 391 ntBASIC15.51■□□□□ 0.07
CDH4P55283 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH4P55283 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.51■□□□□ 0.07
CDH4P55283 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 AC004466.1-201ENST00000599515 1080 ntBASIC15.51■□□□□ 0.07
CDH4P55283 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.51■□□□□ 0.07
CDH4P55283 AC008687.7-202ENST00000637404 953 ntBASIC15.51■□□□□ 0.07
CDH4P55283 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CDH4P55283 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.51■□□□□ 0.07
CDH4P55283 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.51■□□□□ 0.07
CDH4P55283 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CDH4P55283 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CDH4P55283 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CDH4P55283 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CDH4P55283 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CDH4P55283 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CDH4P55283 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 AGAP7P-201ENST00000582299 2062 ntBASIC15.5■□□□□ 0.07
CDH4P55283 AGAP14-201ENST00000624701 2060 ntBASIC15.5■□□□□ 0.07
CDH4P55283 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CDH4P55283 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 AHCYP2-201ENST00000430630 1300 ntBASIC15.5■□□□□ 0.07
CDH4P55283 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms