Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC00528-201ENST00000600723 2160 ntBASIC15.87■□□□□ 0.13
COL4A4P53420 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.87■□□□□ 0.13
COL4A4P53420 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.87■□□□□ 0.13
COL4A4P53420 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL4A4P53420 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
COL4A4P53420 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 AL360270.3-201ENST00000609118 1348 ntBASIC15.87■□□□□ 0.13
COL4A4P53420 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL4A4P53420 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
COL4A4P53420 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 AL357563.1-201ENST00000404728 395 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.86■□□□□ 0.13
COL4A4P53420 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC15.86■□□□□ 0.13
COL4A4P53420 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC15.86■□□□□ 0.13
COL4A4P53420 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 AC015909.3-201ENST00000572855 1794 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 AC091951.1-201ENST00000512854 2465 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 AC018629.1-201ENST00000623381 1736 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 AL359258.3-201ENST00000622910 2331 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 AC006122.1-201ENST00000493323 440 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 RN7SL81P-201ENST00000493781 261 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 ORAOV1P1-201ENST00000503108 395 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.86■□□□□ 0.13
COL4A4P53420 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.86■□□□□ 0.13
COL4A4P53420 AC105137.3-201ENST00000617588 984 ntBASIC15.86■□□□□ 0.13
COL4A4P53420 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL4A4P53420 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL4A4P53420 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.85■□□□□ 0.13
COL4A4P53420 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 ACE3P-201ENST00000423435 1973 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.85■□□□□ 0.13
COL4A4P53420 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.85■□□□□ 0.13
COL4A4P53420 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 AGAP7P-201ENST00000582299 2062 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 AGAP14-201ENST00000624701 2060 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.85■□□□□ 0.13
COL4A4P53420 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL4A4P53420 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.85■□□□□ 0.13
COL4A4P53420 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.85■□□□□ 0.13
COL4A4P53420 AC239868.1-201ENST00000369385 493 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC15.85■□□□□ 0.13
COL4A4P53420 CHCHD2P9-201ENST00000461726 456 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.85■□□□□ 0.13
COL4A4P53420 AC008723.1-201ENST00000506922 207 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL4A4P53420 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
COL4A4P53420 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC15.85■□□□□ 0.13
COL4A4P53420 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC15.85■□□□□ 0.13
COL4A4P53420 PHBP15-201ENST00000574228 665 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.85■□□□□ 0.13
COL4A4P53420 AC084781.1-201ENST00000613737 656 ntBASIC15.85■□□□□ 0.13
COL4A4P53420 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms