Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.36■□□□□ 0.37
SMARCA1P28370 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 AL008721.1-201ENST00000609964 604 ntBASIC17.36■□□□□ 0.37
SMARCA1P28370 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SMARCA1P28370 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.36■□□□□ 0.37
SMARCA1P28370 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.36■□□□□ 0.37
SMARCA1P28370 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.36■□□□□ 0.37
SMARCA1P28370 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 AJ011931.1-201ENST00000618749 2492 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
SMARCA1P28370 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 AL136309.1-201ENST00000403917 691 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SMARCA1P28370 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.35■□□□□ 0.37
SMARCA1P28370 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SMARCA1P28370 RPS2P32-201ENST00000439199 892 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 YBX1P6-201ENST00000442962 1002 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.35■□□□□ 0.37
SMARCA1P28370 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 AL583810.1-201ENST00000553344 1045 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.35■□□□□ 0.37
SMARCA1P28370 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 OR10B1P-201ENST00000601666 907 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 AC073413.1-201ENST00000603927 732 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SMARCA1P28370 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SMARCA1P28370 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.35■□□□□ 0.37
SMARCA1P28370 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.35■□□□□ 0.37
SMARCA1P28370 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 LINC01101-201ENST00000622953 1884 ntBASIC17.35■□□□□ 0.37
SMARCA1P28370 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.35■□□□□ 0.37
SMARCA1P28370 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMARCA1P28370 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.34■□□□□ 0.37
SMARCA1P28370 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
SMARCA1P28370 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.34■□□□□ 0.37
SMARCA1P28370 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 FAM21FP-201ENST00000426241 1131 ntBASIC17.34■□□□□ 0.37
SMARCA1P28370 CHMP1AP1-201ENST00000445563 662 ntBASIC17.34■□□□□ 0.37
SMARCA1P28370 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.34■□□□□ 0.37
SMARCA1P28370 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMARCA1P28370 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.34■□□□□ 0.37
SMARCA1P28370 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.34■□□□□ 0.37
SMARCA1P28370 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms