Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.98□□□□□ -0.33
USF1P22415 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC12.98□□□□□ -0.33
USF1P22415 AC026954.1-201ENST00000429771 1293 ntBASIC12.98□□□□□ -0.33
USF1P22415 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC12.98□□□□□ -0.33
USF1P22415 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC12.98□□□□□ -0.33
USF1P22415 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC12.98□□□□□ -0.33
USF1P22415 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 AC107373.2-201ENST00000607735 490 ntBASIC12.98□□□□□ -0.33
USF1P22415 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.98□□□□□ -0.33
USF1P22415 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC12.98□□□□□ -0.33
USF1P22415 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.98□□□□□ -0.33
USF1P22415 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
USF1P22415 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
USF1P22415 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
USF1P22415 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.97□□□□□ -0.33
USF1P22415 AC126177.1-201ENST00000547829 2218 ntBASIC12.97□□□□□ -0.33
USF1P22415 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 AP002414.2-201ENST00000591780 3365 ntBASIC12.97□□□□□ -0.33
USF1P22415 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 PGGT1BP2-201ENST00000398621 1028 ntBASIC12.97□□□□□ -0.33
USF1P22415 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC12.97□□□□□ -0.33
USF1P22415 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
USF1P22415 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 AHRR-211ENST00000515206 462 ntTSL 5 BASIC12.97□□□□□ -0.33
USF1P22415 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 RIT1-205ENST00000539040 919 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 DUX4L45-201ENST00000566406 1057 ntBASIC12.97□□□□□ -0.33
USF1P22415 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC12.97□□□□□ -0.33
USF1P22415 AC243960.2-201ENST00000600996 747 ntBASIC12.97□□□□□ -0.33
USF1P22415 AC091271.1-201ENST00000611877 1162 ntBASIC12.97□□□□□ -0.33
USF1P22415 AP005019.2-201ENST00000615104 511 ntBASIC12.97□□□□□ -0.33
USF1P22415 AC009542.2-202ENST00000619004 1067 ntBASIC12.97□□□□□ -0.33
USF1P22415 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
USF1P22415 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
USF1P22415 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.97□□□□□ -0.33
USF1P22415 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
USF1P22415 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
USF1P22415 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
USF1P22415 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.96□□□□□ -0.33
USF1P22415 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.96□□□□□ -0.33
USF1P22415 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.96□□□□□ -0.33
USF1P22415 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
USF1P22415 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.96□□□□□ -0.33
USF1P22415 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
USF1P22415 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.96□□□□□ -0.33
USF1P22415 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
USF1P22415 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
USF1P22415 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC12.96□□□□□ -0.33
USF1P22415 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.96□□□□□ -0.33
USF1P22415 RPL13AP20-201ENST00000459725 609 ntBASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms