Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC14.27□□□□□ -0.13
COL5A1P20908 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 AC131206.1-201ENST00000538078 1211 ntBASIC14.27□□□□□ -0.13
COL5A1P20908 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.27□□□□□ -0.13
COL5A1P20908 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.27□□□□□ -0.13
COL5A1P20908 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
COL5A1P20908 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
COL5A1P20908 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC14.27□□□□□ -0.13
COL5A1P20908 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.27□□□□□ -0.13
COL5A1P20908 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.27□□□□□ -0.13
COL5A1P20908 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.27□□□□□ -0.13
COL5A1P20908 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.27□□□□□ -0.13
COL5A1P20908 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL5A1P20908 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL5A1P20908 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 AL590440.2-201ENST00000641973 1595 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 AC015909.3-201ENST00000572855 1794 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
COL5A1P20908 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
COL5A1P20908 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.26□□□□□ -0.13
COL5A1P20908 AL583805.1-201ENST00000391389 531 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 AL512430.1-201ENST00000392575 860 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 AC079112.1-201ENST00000454972 939 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 FTH1P22-201ENST00000456305 520 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.26□□□□□ -0.13
COL5A1P20908 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC14.26□□□□□ -0.13
COL5A1P20908 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 AC103810.10-201ENST00000606504 343 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC14.26□□□□□ -0.13
COL5A1P20908 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
COL5A1P20908 AC005618.3-201ENST00000624928 458 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 CICP11-201ENST00000434745 2827 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.26□□□□□ -0.13
COL5A1P20908 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.26□□□□□ -0.13
COL5A1P20908 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 AC023090.2-201ENST00000625182 2110 ntBASIC14.26□□□□□ -0.13
COL5A1P20908 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL5A1P20908 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.25□□□□□ -0.13
COL5A1P20908 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
COL5A1P20908 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
COL5A1P20908 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
COL5A1P20908 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.25□□□□□ -0.13
COL5A1P20908 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.25□□□□□ -0.13
COL5A1P20908 AL627422.1-201ENST00000434104 580 ntBASIC14.25□□□□□ -0.13
COL5A1P20908 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 OR2R1P-201ENST00000441404 914 ntBASIC14.25□□□□□ -0.13
COL5A1P20908 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.25□□□□□ -0.13
COL5A1P20908 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.25□□□□□ -0.13
COL5A1P20908 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.25□□□□□ -0.13
COL5A1P20908 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 AC027601.3-201ENST00000622907 509 ntBASIC14.25□□□□□ -0.13
COL5A1P20908 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.25□□□□□ -0.13
COL5A1P20908 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.25□□□□□ -0.13
COL5A1P20908 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.25□□□□□ -0.13
COL5A1P20908 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.25□□□□□ -0.13
COL5A1P20908 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
COL5A1P20908 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.25□□□□□ -0.13
COL5A1P20908 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
COL5A1P20908 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
COL5A1P20908 LILRP1-201ENST00000444199 1370 ntBASIC14.25□□□□□ -0.13
COL5A1P20908 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
COL5A1P20908 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL5A1P20908 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
COL5A1P20908 ORAOV1P1-201ENST00000503108 395 ntBASIC14.25□□□□□ -0.13
COL5A1P20908 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.25□□□□□ -0.13
COL5A1P20908 AC126177.1-201ENST00000547829 2218 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms