Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.36■□□□□ 0.05
RETP07949 AC020658.6-201ENST00000623564 1870 ntBASIC15.36■□□□□ 0.05
RETP07949 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
RETP07949 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
RETP07949 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.36■□□□□ 0.05
RETP07949 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
RETP07949 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.36■□□□□ 0.05
RETP07949 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RETP07949 EEF1DP6-201ENST00000449232 372 ntBASIC15.36■□□□□ 0.05
RETP07949 RN7SL11P-201ENST00000471305 293 ntBASIC15.36■□□□□ 0.05
RETP07949 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.36■□□□□ 0.05
RETP07949 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.36■□□□□ 0.05
RETP07949 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.36■□□□□ 0.05
RETP07949 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 AL023775.1-201ENST00000454907 1746 ntBASIC15.36■□□□□ 0.05
RETP07949 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.36■□□□□ 0.05
RETP07949 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
RETP07949 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RETP07949 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.36■□□□□ 0.05
RETP07949 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.36■□□□□ 0.05
RETP07949 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RETP07949 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RETP07949 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
RETP07949 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RETP07949 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.35■□□□□ 0.05
RETP07949 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.35■□□□□ 0.05
RETP07949 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RETP07949 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 TMBIM7P-203ENST00000641617 1718 ntBASIC15.35■□□□□ 0.05
RETP07949 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
RETP07949 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.35■□□□□ 0.05
RETP07949 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
RETP07949 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
RETP07949 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
RETP07949 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.35■□□□□ 0.05
RETP07949 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.35■□□□□ 0.05
RETP07949 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
RETP07949 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RETP07949 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.35■□□□□ 0.05
RETP07949 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 PRKXP1-201ENST00000561423 1122 ntBASIC15.35■□□□□ 0.05
RETP07949 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.35■□□□□ 0.05
RETP07949 ECM1P1-201ENST00000604092 1279 ntBASIC15.35■□□□□ 0.05
RETP07949 AC091544.8-201ENST00000619490 361 ntBASIC15.35■□□□□ 0.05
RETP07949 BX539320.1-201ENST00000623759 877 ntBASIC15.35■□□□□ 0.05
RETP07949 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.35■□□□□ 0.05
RETP07949 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.35■□□□□ 0.05
RETP07949 TUBBP5-203ENST00000508529 1334 ntBASIC15.35■□□□□ 0.05
RETP07949 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.35■□□□□ 0.05
RETP07949 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RETP07949 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.35■□□□□ 0.05
RETP07949 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.35■□□□□ 0.05
RETP07949 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.35■□□□□ 0.05
RETP07949 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
RETP07949 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
RETP07949 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RETP07949 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.34■□□□□ 0.05
RETP07949 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.34■□□□□ 0.05
RETP07949 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RETP07949 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms