Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.38□□□□□ -0.43
FOXA2Q9Y261 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA2Q9Y261 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 KRT18P64-201ENST00000434946 1219 ntBASIC12.37□□□□□ -0.43
FOXA2Q9Y261 BCRP1-201ENST00000444246 691 ntBASIC12.37□□□□□ -0.43
FOXA2Q9Y261 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 SPCS2P1-201ENST00000561636 679 ntBASIC12.37□□□□□ -0.43
FOXA2Q9Y261 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 INO80C-206ENST00000586489 594 ntTSL 3 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 SNX18-202ENST00000343017 3140 ntBASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA2Q9Y261 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AC007787.1-201ENST00000588095 1583 ntBASIC12.36□□□□□ -0.43
FOXA2Q9Y261 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 WDR53-203ENST00000429115 683 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms