Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLN6Q9NWW5 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC131212.3-201ENST00000624087 4219 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 MIR346-201ENST00000362234 95 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC009078.2-202ENST00000463353 338 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 RNA5SP416-201ENST00000516838 111 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AP000842.3-202ENST00000569238 1080 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC091812.2-201ENST00000619081 385 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC092865.6-201ENST00000642101 219 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 MBLAC2-202ENST00000514906 1936 ntBASIC13.98□□□□□ -0.17
CLN6Q9NWW5 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLN6Q9NWW5 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 AL137784.3-201ENST00000623858 2288 ntBASIC13.97□□□□□ -0.17
CLN6Q9NWW5 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLN6Q9NWW5 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms