Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRIM39Q9HCM9 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AC134312.5-201ENST00000568031 1313 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 C8orf49-201ENST00000525043 1968 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 TMEM14DP-201ENST00000422205 345 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 GHSR-202ENST00000427970 912 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AC012441.1-201ENST00000446669 685 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 USP32P1-208ENST00000506594 1164 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AC233724.13-201ENST00000598383 410 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AL162274.1-201ENST00000617191 1098 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 AC126365.1-201ENST00000578585 1514 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 PPT1-215ENST00000641471 2368 ntBASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.17■□□□□ 0.02
TRIM39Q9HCM9 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 KRT8P44-201ENST00000441609 1350 ntBASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 AC005229.1-201ENST00000392885 409 ntBASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.16■□□□□ 0.02
TRIM39Q9HCM9 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms