Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PAAF1Q9BRP4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 AC011270.2-201ENST00000624293 2550 ntBASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 AC091951.1-201ENST00000512854 2465 ntBASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.11■□□□□ 0.17
PAAF1Q9BRP4 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 AC138028.6-201ENST00000616106 1482 ntBASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 SCARNA20.5-201ENST00000516991 142 ntBASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 AL021578.1-201ENST00000613646 709 ntBASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 AC002472.3-201ENST00000640124 621 ntBASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PAAF1Q9BRP4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 AC138035.3-201ENST00000622706 2791 ntBASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PAAF1Q9BRP4 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms