Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP47Q96K76 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC21.16■□□□□ 0.98
USP47Q96K76 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC21.16■□□□□ 0.98
USP47Q96K76 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
USP47Q96K76 TPO-203ENST00000346956 2923 ntTSL 5 BASIC21.16■□□□□ 0.98
USP47Q96K76 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC21.16■□□□□ 0.98
USP47Q96K76 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 RN7SKP175-201ENST00000408472 289 ntBASIC21.16■□□□□ 0.98
USP47Q96K76 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
USP47Q96K76 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC21.16■□□□□ 0.98
USP47Q96K76 FTLP10-202ENST00000505798 471 ntBASIC21.16■□□□□ 0.98
USP47Q96K76 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC21.16■□□□□ 0.98
USP47Q96K76 AP000593.2-201ENST00000542775 1433 ntBASIC21.16■□□□□ 0.98
USP47Q96K76 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP47Q96K76 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP47Q96K76 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC21.15■□□□□ 0.98
USP47Q96K76 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP47Q96K76 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
USP47Q96K76 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
USP47Q96K76 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP47Q96K76 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC21.15■□□□□ 0.98
USP47Q96K76 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP47Q96K76 CNN2P10-201ENST00000443067 918 ntBASIC21.15■□□□□ 0.98
USP47Q96K76 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC21.15■□□□□ 0.98
USP47Q96K76 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC21.15■□□□□ 0.98
USP47Q96K76 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
USP47Q96K76 HNRNPA1P48-202ENST00000565308 961 ntBASIC21.15■□□□□ 0.98
USP47Q96K76 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC21.15■□□□□ 0.98
USP47Q96K76 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC21.15■□□□□ 0.98
USP47Q96K76 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC21.15■□□□□ 0.98
USP47Q96K76 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC21.15■□□□□ 0.98
USP47Q96K76 CICP23-201ENST00000605013 2741 ntBASIC21.15■□□□□ 0.98
USP47Q96K76 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP47Q96K76 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC21.15■□□□□ 0.98
USP47Q96K76 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC21.15■□□□□ 0.98
USP47Q96K76 CROCCP1-201ENST00000426910 5675 ntBASIC21.15■□□□□ 0.98
USP47Q96K76 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP47Q96K76 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC21.14■□□□□ 0.98
USP47Q96K76 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP47Q96K76 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC21.14■□□□□ 0.98
USP47Q96K76 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP47Q96K76 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP47Q96K76 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP47Q96K76 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
USP47Q96K76 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
USP47Q96K76 SERF2-209ENST00000409646 559 ntTSL 4 BASIC21.14■□□□□ 0.98
USP47Q96K76 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC21.14■□□□□ 0.98
USP47Q96K76 FAM8A4P-201ENST00000435433 1213 ntBASIC21.14■□□□□ 0.98
USP47Q96K76 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC21.14■□□□□ 0.98
USP47Q96K76 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC21.14■□□□□ 0.98
USP47Q96K76 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC21.14■□□□□ 0.98
USP47Q96K76 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC21.14■□□□□ 0.98
USP47Q96K76 AC079316.1-201ENST00000548397 411 ntBASIC21.14■□□□□ 0.98
USP47Q96K76 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
USP47Q96K76 REXO1L6P-201ENST00000603433 1515 ntBASIC21.14■□□□□ 0.97
USP47Q96K76 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC21.14■□□□□ 0.97
USP47Q96K76 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP47Q96K76 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC21.14■□□□□ 0.97
USP47Q96K76 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
USP47Q96K76 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP47Q96K76 AHCYP2-201ENST00000430630 1300 ntBASIC21.14■□□□□ 0.97
USP47Q96K76 FGD5P1-202ENST00000614866 2498 ntBASIC21.14■□□□□ 0.97
USP47Q96K76 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
USP47Q96K76 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
USP47Q96K76 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
USP47Q96K76 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP47Q96K76 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP47Q96K76 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC21.13■□□□□ 0.97
USP47Q96K76 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP47Q96K76 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC21.13■□□□□ 0.97
USP47Q96K76 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms