Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 LYPLA2P1-203ENST00000447689 696 ntBASIC16.41■□□□□ 0.22
LRCH3Q96II8 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 RN7SL396P-201ENST00000471086 295 ntBASIC16.41■□□□□ 0.22
LRCH3Q96II8 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 AC106820.3-201ENST00000561653 397 ntBASIC16.41■□□□□ 0.22
LRCH3Q96II8 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 MIR4783-201ENST00000580343 82 ntBASIC16.41■□□□□ 0.22
LRCH3Q96II8 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 LINC00226-202ENST00000618204 1052 ntTSL 2 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
LRCH3Q96II8 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LRCH3Q96II8 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 FAM90A2P-201ENST00000511144 1395 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 FAM90A25P-201ENST00000528404 1395 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 LINC01144-201ENST00000626198 1710 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 AL136309.1-201ENST00000403917 691 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 MIR3677-201ENST00000578964 60 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 AL109837.1-201ENST00000603272 613 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 AC107464.3-201ENST00000609172 737 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 AC073592.2-201ENST00000623062 780 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 AC103798.2-201ENST00000624292 632 ntBASIC16.4■□□□□ 0.22
LRCH3Q96II8 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
LRCH3Q96II8 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LRCH3Q96II8 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 ALOX12P2-203ENST00000570921 1945 ntBASIC16.39■□□□□ 0.21
LRCH3Q96II8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 HNRNPA1P58-201ENST00000403629 610 ntBASIC16.39■□□□□ 0.21
LRCH3Q96II8 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 AC130709.1-201ENST00000484779 1212 ntBASIC16.39■□□□□ 0.21
LRCH3Q96II8 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 AL132994.2-201ENST00000603120 687 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms